Coverage for cedar/cli/main.py : 0%

"""Main group of commands for cedar CLI 

""" 

import logging 

from pkg_resources import iter_entry_points 

import click 

import click_plugins 

import cedar 

from . import options 

_context = dict( 

token_normalize_func=lambda x: x.lower(), 

help_option_names=['--help', '-h'] 

) 

@click_plugins.with_plugins(ep for ep in 

iter_entry_points('cedar.cli')) 

@click.group(help='cedar command line interface', context_settings=_context) 

@options.opt_config_file 

@click.version_option(cedar.__version__) 

@click.option('--verbose', '-v', count=True, help='Be verbose') 

@click.option('--quiet', '-q', count=True, help='Be quiet') 

@click.pass_context 

def main(ctx, config_file, verbose, quiet): 

""" cedar 

Creator for Analysis Ready Data (ARD) 

Home: https://github.com/ceholden/cedar 

""" 

# Setup logging 

from stems.logging_ import setup_logger 

verbosity = verbose - quiet 

log_level = max(logging.DEBUG, logging.WARNING - verbosity * 10) 

logger = setup_logger('cedar', level=log_level) 

# Setup config file (if provided) 

if config_file: 

from cedar.config import Config 

config = Config.from_yaml(config_file) 

else: 

config = None 

ctx.obj = {} 

ctx.obj['logger'] = logger 

ctx.obj['config_file'] = config